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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|7434413
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.86
Topology Confidence: 0.82
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLCGDMRGVL FSVLLLFPAF SFSANTLSAT ESLTISSNKT ISSPGNIFEL GFFKPSSSSR  60
   61 WYLGIWYKAI SKRTYVWVAN RDHPLSTSTG TLKISDSNLV VVDGSDTAVW STNLTGGGDV 120
  121 RSPVVAELLD NGNFVLRDSN NNDPDIVLWQ SFDFPTDTLL PEMKLGWDLK TGFNWFLRSW 180
  181 KSPDDPSSGD YSFKLKTRGF PEAFLWNKAS QVYRSGPWNG IRFSGVPEMQ PFDYIEFNFT 240
  241 TSNQEVTYSF HITKDNMYSR LSLSSTGSLQ RFTWIEAIQN WNQFWYAPKD QCDDYKECGT 300
  301 YGYCDSNTYP VCNCMRGFEP RNPQAWGLRD GSDGCVRKTA LSCNGGDGFV RLKKMKLPDT 360
  361 AATSVDRGIG IKECEEKCKS DCNCTAFANT DIRGGGSGCV VWTGDILDTR NYAKGGQDLY 420
  421 VRLAATDLED TTNRNAKIIG SCIGVSVLLL LCFIFYRFWK RKQKRSIAIE TSFVDQVRSQ 480
  481 DLLMNEVVIP PNRRHISREN KTDDLELPLM DFEAVAIATD NFSNANKLGQ GGFGIVYKGR 540
  541 LLDGQEIAVK RLSKMSVQGT DEFKNEVKLI ARLQHINLVR LLGCCVDEGE KMLIYEYLEN 600
  601 LSLDSHLFDK TRSCKLNWQK RFDITNGIAR GLLYLHQDSR FRIIHRDLKA SNVLLDKDMT 660
  661 PKISDFGMAR IFGRDETEAN TRKVVGTYGY MSPEYAMDGI FSTKSDVFSF GVLLLEIISG 720
  721 KRNKGFYNSD HDLNLLGCVW RNWKKGKGLD IVDPIILDSS PSTYRPLEIL RCIKIGLLCV 780
  781 QERANDRPTM SSVVMMLGSE TAAIPQPEQP GYCVGRSPLD TDSSSSNQRH DESWSVNQMT 840
  841 VSVIDPR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle