YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11278947, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMITRVEPRA QIAVSGGWTT FVLDGPYVSS HEALSRSHIL KPGVTSAWIW TRAPTIGGMR  60
   61 FASTITLGEK TPMKEEDANQ KKTENESTGG DAAGGNNKGD KGIASYWGVE PNKITKEDGS 120
  121 EWKWNCFRPW ETYKADITID LKKHHVPTTF LDRIAYWTVK SLRWPTDLFF QRRYGCRAMM 180
  181 LETVAAVPGM VGGMLLHCKS LRRFEQSGGW IKALLEEAEN ERMHLMTFME VAKPKWYERA 240
  241 LVITVQGVFF NAYFLGYLIS PKFAHRMVGY LEEEAIHSYT EFLKELDKGN IENVPAPAIA 300
  301 IDYWRLPADA TLRDVVMVVR ADEAHHRDVN HFASDIHYQG RELKEAPAPI GYH

Type	Start	End	Confidence
Cytoplasmic	1	177	0.48
Transmembrane Helix	178	197	0.57
Non-Cytoplasmic	198	353	0.70