YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20340269
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNAQLKLTE VDDDELWLAV RLAHCSSNIS SSSSTRTTSS NQRHNQQLTT LQPRSLSTKH  60
   61 HSNIASEQHN SQQQEPASKD EDVANHGRSN DQQTHLQQLD SSNMLSPKTA AAATAAGDEA 120
  121 TTQQPTNIRL CARKRQRLRR RRKRKPATPN ETDIKKQQQL SMPPFKTRKS TDTYSTPAAI 180
  181 TSCPTATYMQ CRASDNEFSI PISRHDRVST ATFAWVLHVL QVLLVSLQQW QLHVQQRSVL 240
  241 LFRRIAASTI AFISYLGSFA AQLRSSSSSS SNSSNSGNSS STQILNGLNK HSWIFLLIYL 300
  301 NLSAKVCLAG YHEKRLLHDL LDPYNTLERP VLNESDPLQL SFGLTLMQII DVDEKNQLLV 360
  361 TNVWLKLEWN DMNLRWNTSD YGGVKDLRIP PHRIWKPDVL MYNSADEGFD GTYQTNVVVR 420
  421 NNGSCLYVPP GIFKSTCKID ITWFPFDDQR CEMKFGSWTY DGFQVCPANV TRSITTAARN 480
  481 PI

Type	Start	End	Confidence
Non-Cytoplasmic	1	210	0.75
Transmembrane Helix	211	230	0.73
Cytoplasmic	231	239	0.86
Transmembrane Helix	240	261	0.90
Non-Cytoplasmic	262	482	0.90