YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|20152840
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.63
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNAQLKLTE VDDDELWLAV RLAHCSSNFS SSSSTRTTSS NQRHNQQLTT LQPRSLSTKH  60
   61 HSNIASEQHN SQQQEPASKD EDVANHGRSN DQQTHLQQLD SSNMLSPKTA AAATAAGDEA 120
  121 TTQQPTNIRL CARKRQRLRR RRKRKPATPN ETDIKKQQQL SMPPFKTRKS TDTYSTPAAT 180
  181 TSCPTATYMQ CRASDNEFSI PISRHDRVST ATFAWVLHVL QVLLVSLQQW QLHVQQRSVL 240
  241 LFRRIAASTI AFISYLGSFA AQLKNSSSSS SSSNSSNNSS TQILNGLNKH SWIFLLIYLN 300
  301 LSAKVCLAGY HEKRLLHDLL DPYNTLERPV LNESDPLQLS FGLTLMQIID VDEKNQLLVT 360
  361 NVWLKLEWND MNLRWNTSDY GGVKDLRIPP HRIWKPDVLM YNSADEGFDG TYQTNVVVRN 420
  421 NGSCLYVPPG IFKSTCKIDI TWFPFDDQRC EMKFGSWTYD GFQLDLQLQD ETGGDISSYV 480
  481 LNGEWELLGV PGKRNEIYYN CCPEPYIDIT FAIIIRRRTL YYFFNLIIPC VLIASMALLG 540
  541 FTLPPDSGEK LSLGVTILLS LTVFLNMVAE TMPATSDAVP LLGTYFNCIM FMVASSVVST 600
  601 ILILNYHHRN ADTHEMSEWI RIVFLCWLPW ILRMSRPGRP LILEFPTTPC SDTSSERKHQ 660
  661 ILSDVELKER SSKSLLANVL DIDDDFRHNC RPMTPGGTLP HNPAFYRTVY GQGDDGSIGP 720
  721 IGSTRMPDAV THHTCIKSST EYELGLILKE IRFITDQLRK DDECNDIAND WKFAAMVVDR 780
  781 LCLIIFTMFA ILATIAVLLS APHIIVS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle