YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20152853
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.80
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	25	0.77
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	237	0.81
Transmembrane Helix	238	261	0.92
Cytoplasmic	262	268	0.75
Transmembrane Helix	269	287	0.95
Non-Cytoplasmic	288	295	0.63
Transmembrane Helix	296	316	0.93
Cytoplasmic	317	327	0.71
Transmembrane Helix	328	351	0.88
Non-Cytoplasmic	352	363	0.65
Transmembrane Helix	364	381	0.73
Cytoplasmic	382	496	0.98
Transmembrane Helix	497	521	0.89
Non-Cytoplasmic	522	523	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSPLPASLS LFVLLIFLAI IKESCQGPHE KRLLNHLLST YNTLERPVAN ESEPLEVKFG  60
   61 LTLQQIIDVD EKNQILTTNA WLNLEWNDYN LRWNETEYGG VKDLRITPNK LWKPDVLMYN 120
  121 SADEGFDGTY HTNIVVKHNG SCLYVPPGIF KSTCKMDITW FPFDDQHCEM KFGSWTYDGN 180
  181 QLDLVLNSED GGDLSDFITN GEWYLLAMPG KKNTIVYACC PEPYVDITFT IQIRRRTLYY 240
  241 FFNLIVPCVL ISSMALLGFT LPPDSGEKLT LGVTILLSLT VFLNLVAESM PTTSDAVPLI 300
  301 GVTILLSLTV FLNLVAETLP QVSDAIPLLG TYFNCIMFMV ASSVVLTVVV LNYHHRTADI 360
  361 HEMPPWIKSV FLQWLPWILR MGRPGRKITR KTILLSNRMK ELELKERSSK SLLANVLDID 420
  421 DDFRHTISGS QTAIGSSASF GRPTTVEEHH TAIGCNHKDL HLILKELQFI TARMRKADDE 480
  481 AELIGDWKFA AMVVDRFCLI VFTLFTIIAT VTVLLSAPHI IVQ