YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20152849
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.81
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSPLPASLS LFVLLIFLAI IKESCQGPHE KRLLNHLLST YNTLERPVAN ESEPLEVKFG  60
   61 LTLQQIIDVD EKNQLLITNL WLSLEWNDYN LRWNETEYGG VKDLRITPNK LWKPDVLMYN 120
  121 SADEGFDGTY HTNIVVKHSG SCLYVPPGIF KSTCKMDITW FPFDDQHCEM KFGSWTYDGN 180
  181 QLDLVLNSED GGDLSDFITN GEWYLLAMPG KKNTIVYACC PEPYVDITFT IQIRRRTLYY 240
  241 FFNLIVPCVL ISSMALLGFT LPPDSGEKLT LGVTILLSLT VFLNLVAETL PQVSDAIPLL 300
  301 GTYFNCIMFM VASSVVLTVV VLNYHHRTAD IHEMPPWIKS VFLQWLPWIL RMGRPGRKIT 360
  361 RKTILLSNRM KELELKERSS KSLLANVLDI DDDFRHTISG SQTAIGSSAS FGRPTTVEEH 420
  421 HTAIGCNHKD LHLILKELQF ITARMRKADD EAELIGDWKF AAMVVDRFCL IVFTLFTIIA 480
  481 TVTVLLSAPH IIVQ

Type	Start	End	Confidence
Signal Peptide	1	25	0.78
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	237	0.82
Transmembrane Helix	238	261	0.92
Cytoplasmic	262	268	0.77
Transmembrane Helix	269	290	0.89
Non-Cytoplasmic	291	299	0.71
Transmembrane Helix	300	324	0.87
Cytoplasmic	325	467	0.95
Transmembrane Helix	468	492	0.89
Non-Cytoplasmic	493	494	0.89