YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SYP81_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRFRDRTED FKDSVRNSAV SIGYNESKVA STMASFIIHK PKERSPFTKA AFKTLDSIKE  60
   61 LELFMLKHRK DYVDLHRTTE QEKDSIEQEV AAFIKACKEQ IDILINSIRN EEANSKGWLG 120
  121 LPADNFNADS IAHKHGVVLI LSEKLHSVTA QFDQLRATRF QDIINRAMPR RKPKRVIKEA 180
  181 TPINTTLGNS ESIEPDEIQA QPRRLQQQQL LDDETQALQV ELSNLLDGAR QTETKMVEMS 240
  241 ALNHLMATHV LQQAQQIEFL YDQAVEATKN VELGNKELSQ AIQRNSSSRT FLLLFFFVLT 300
  301 FSVLFLDWYS

Type	Start	End	Confidence
Cytoplasmic	1	289	0.52
Transmembrane Helix	290	309	0.92
Non-Cytoplasmic	310	310	0.53