YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CSLA1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLFLKPFLF LYDTTLSLLL LLFNGWSLED TAAAQKRREA DKNAAETEWI QLQYLWTKTR  60
   61 SVVLLPVFKG LVVMCLVLSI IVFFESFYMN FVILFVKLFK RKPHKVYKWE AMQEDVEVGP 120
  121 DNYPMVLIQI PMYNEKEVFQ LSIAAICSLV WPSSRLVVQV VDDSTDPAVR EGVDVEIAKW 180
  181 QSQGINIRCE RRDNRNGYKA GAMKEALTQS YVKQCDFVAV FDADFQPEPD YLIRAVPFLV 240
  241 HNPDVALVQA RWIFVNANKC LMTRMQEMSL NYHFKVEQES GSTRHAFFGF NGTAGVWRIS 300
  301 AMEAAGGWKS RTTVEDMDLA VRVGLHGWKF VYLNDLTVRN ELPSKFKAYR FQQHRWSCGP 360
  361 ANLFRKMTME IIFNKRVSIW KKFYVIYSFF FVRKVAVHFL TFFFYCIIVP TSVFFPEIHI 420
  421 PSWSTIYVPS LISIFHTLAT PRSFYLVIFW VLFENVMAMH RTKGTCIGLL EGGRVNEWVV 480
  481 TEKLGDALKS KLLSRVVQRK SCYQRVNSKE VMVGVYILGC ALYGLIYGHT WLHFYLFLQA 540
  541 TAFFVSGFGF VGT

Type	Start	End	Confidence
Cytoplasmic	1	7	0.59
Transmembrane Helix	8	28	0.67
Non-Cytoplasmic	29	69	0.79
Transmembrane Helix	70	95	0.81
Cytoplasmic	96	394	0.91
Transmembrane Helix	395	415	0.86
Non-Cytoplasmic	416	431	0.78
Transmembrane Helix	432	453	0.89
Cytoplasmic	454	510	0.94
Transmembrane Helix	511	527	0.87
Non-Cytoplasmic	528	531	0.58
Transmembrane Helix	532	552	0.74
Cytoplasmic	553	553	0.71