YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28393587
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSYPIGSSK AFHAYSRSGG FDLESGGTIR KSRKPKTSFS KMIKSLGNRL HHMFKLHPVL  60
   61 VFVVCVSFGI TVLILVSSIY GNRLGSTVSY YKKNDLDSDG YPFANLKNLV MVAGHSVYTS 120
  121 SDCGKVEKED SWFLESYQKN PGQAATFLSH IQEGVEAAAK DDESLLLFSG GETRKDAGPR 180
  181 SEAQSYWAVA ESKGWFGKNE VRSRALTEEH ARDSFENLLF SVCRFRELTG SYPQNITVVS 240
  241 YDFKEERFAH LHRSAMGFPE SRFFYLGTPA SLSSKEGALK GEALVRSQFQ EDPYGCVGSL 300
  301 WRKKLNRDPF HRTIPYPIGC PEIGGLFRYC GSAPFPGSLP WG

Type	Start	End	Confidence
Cytoplasmic	1	55	0.94
Transmembrane Helix	56	80	0.86
Non-Cytoplasmic	81	342	0.96