YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28393539
Protein type:	Transmembrane
Type Confidence:	0.53
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEKGLKRSG VAVVVALLTM VHVSVSVPFI MLHGISAQCS NARDANFTQL LTNLSGSPGF  60
   61 CLEIGNGVAD SWLMPLTRQA EIACEKVKQM KELSQGYNIV GRSQGNLVAR GLIEFCDGGP 120
  121 PVYNYISLAG PHAGISSVPM CGSGLFCKLA DELIKGDIYS DFIQDHLAPS GYLKIPTDMT 180
  181 KYLGSSKYLP KLNNEIPDQR NQTYKDRFTS LHNLVLIKFQ GDKVIVPKDS SWFGFYPDGE 240
  241 FEPLLSAQQT KLYTEDWIGL KTLDDAGKVK FVSVAGEHIR MVDEDVVKHV VPYLQDQPSS 300
  301 VQSFNRKTKQ PLHA

Type	Start	End	Confidence
Cytoplasmic	1	9	0.50
Transmembrane Helix	10	27	0.49
Non-Cytoplasmic	28	314	0.93