YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28393314
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	42	0.98
Transmembrane Helix	43	63	0.93
Non-Cytoplasmic	64	83	0.90
Transmembrane Helix	84	106	0.91
Cytoplasmic	107	114	0.92
Transmembrane Helix	115	135	0.91
Non-Cytoplasmic	136	145	0.80
Transmembrane Helix	146	167	0.88
Cytoplasmic	168	176	0.87
Transmembrane Helix	177	200	0.85
Non-Cytoplasmic	201	207	0.77
Transmembrane Helix	208	228	0.92
Cytoplasmic	229	242	0.83
Transmembrane Helix	243	262	0.93
Non-Cytoplasmic	263	268	0.79
Transmembrane Helix	269	291	0.88
Cytoplasmic	292	299	0.90
Transmembrane Helix	300	319	0.92
Non-Cytoplasmic	320	329	0.80
Transmembrane Helix	330	350	0.95
Cytoplasmic	351	385	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIPRQEIHI EIDNSIPSSK EFKTGLADAK PVVLMSALRS LHAGYFRISL SLCSQALLWK  60
   61 IMIAPESPSM SHMHSKLPSM AFHLLWYLAL VTQVSLCFLY ALKCIFFFDK VKEEFLHYIG 120
  121 VNYLYAPSIS WLLMLQSAPM MEPNSVLYQT LFWIFAVPVL TLDIKLYGQW FTTEKRFLSM 180
  181 LANPASQVSV IANLVAARGA AEMGWNECAL CMFSIGMVHY LVIFVTLYQR LPGGNNFPAK 240
  241 LRPIFFLFVA APAMASLAWN SICGTFDAVA KMLFFLSLFI FMSLVCRPNL FKKSMKRFNV 300
  301 AWWAYSFPLT FLALDSVQYA QEVKDPVGSG LMLIFSSISV LIFLGMMVLT AANSNRLLRH 360
  361 DPVLGSATDP KDKQKTLSLN ATNQN