YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LHTL7_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.93
Transmembrane Helix	42	64	0.79
Non-Cytoplasmic	65	65	0.43
Transmembrane Helix	66	90	0.69
Cytoplasmic	91	115	0.66
Transmembrane Helix	116	140	0.81
Non-Cytoplasmic	141	155	0.75
Transmembrane Helix	156	176	0.88
Cytoplasmic	177	183	0.63
Transmembrane Helix	184	207	0.90
Non-Cytoplasmic	208	225	0.75
Transmembrane Helix	226	246	0.73
Cytoplasmic	247	268	0.89
Transmembrane Helix	269	292	0.88
Non-Cytoplasmic	293	318	0.93
Transmembrane Helix	319	338	0.91
Cytoplasmic	339	358	0.89
Transmembrane Helix	359	380	0.90
Non-Cytoplasmic	381	385	0.73
Transmembrane Helix	386	409	0.89
Cytoplasmic	410	418	0.93
Transmembrane Helix	419	441	0.94
Non-Cytoplasmic	442	456	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPAPSTDPQ PISGEKNGGD GGRIPVEEWL PITESRKGNV YTATFHLLCS GIGLQVILLP  60
   61 AAFAALGWVW GTIILTVGFV WKLYTTWLLV QLHEAVPGIR ISRYVRLAIA SFGVKLGKLL 120
  121 GIFPVMYLSG GACTILVITG GKSIQQLLQI MSDDNTAPLT SVQCFLVFSC IAMIMSQFPN 180
  181 LNSLFGVSLI GAFMGIAYCT VIWILPVASD SQRTQVSVSY ATMDKSFVHI FNAIGLIALV 240
  241 YRGNNLVLEI QGTLPSDSKN PSCKTMWRAV MISHALVAIC MFPLTFAVYW AYGDKIPATG 300
  301 GPVGNYLKLY TQEHSKRAAC FIHLTFIFSC LCSYPINLMP ACDNIEMVYI TKKKKPASII 360
  361 VRMMLRVFLS LVCFTIAVGF PFLPYLAVLI GAIALLVTFT YPCFMWISIK KPQRKSPMWL 420
  421 FNVLVGCLGA SLSVLLLVAS AMRLAQKGLH ANFFRP