YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48958451
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSTMKKQIVR QFITVKKVLH LPPEPPPPPP PPKRHVLAVG SCTLDMITIV DLPLFPGQVQ  60
   61 RTTEGSWRRG GPAANICTVW RRLGLECEFL GVLSRVRAFE SLLNGFQSQG IDISHCPLTN 120
  121 HRPAHRSIIV QRNVDTRTML EFANANQELT YQQFVGAVDY QKYSWIHFEC RNPVEMLRMV 180
  181 LAVIQFNERC PESRITLSVD LDNLRPATML MASMVDYVFA LLRTLGLRPK KVPVQETSMA 240
  241 VLPAAHSYAH SHGSLYRLAG CHYHFIRLAG IVGASAIFMG AYCKYVLKDV SDPKEQVDSQ 300
  301 AFADVANRIH FLHSFAMMAM PLAHYPVFTG TLMITGMMLF SGCMYYRALT GEKRLQPYAT 360
  361 VGGFCLMAAW LSLVL

Type	Start	End	Confidence
Cytoplasmic	1	262	0.70
Transmembrane Helix	263	283	0.88
Non-Cytoplasmic	284	321	0.90
Transmembrane Helix	322	346	0.87
Cytoplasmic	347	354	0.87
Transmembrane Helix	355	374	0.90
Non-Cytoplasmic	375	375	0.93