YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20331063
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGKIVKSSL AIIQSFLVIL LTYLLSAVRE TEIVSTTAIA LYILHYFVFY ISDYGQDFFK  60
   61 RGYLIELVQT LKYILFFALA ISISNFFLED RFSISRRGMI YFLTLHALLV YVLNLFIKWY 120
  121 WKRAYPNFKG SKKILLLTAT SRVEKVLDRL IESNELVGEL VAVSVLDKPD FQHDCLKVVA 180
  181 EGEIVNFATH EVVDEVFINL PSEKYNIGEL VSQFETMGID VTVNLNAFDR SLARNKQIRE 240
  241 MAGLNVVTFS TTFYKTSHVI AKRIIDIVGA LVGLILCGLV SIVLALLIRK DGGSAIFAQT 300
  301 RIGKNGRQFT FYKFRSMCVD AEAKKRELME QNTMQGGMFK VDDDPRITKI GRFIRKTSLD 360
  361 ELPQFYNVLK GDMSLVGTRP PTVDEYEHYT PEQKRRLSFK PGITGLWQVS GRSEIKNFDE 420
  421 VVKLDVAYIN GWTIWKDIEI LLKTVKVVFM RDGAK

Type	Start	End	Confidence
Cytoplasmic	1	8	0.84
Transmembrane Helix	9	27	0.92
Non-Cytoplasmic	28	32	0.81
Transmembrane Helix	33	52	0.88
Cytoplasmic	53	69	0.77
Transmembrane Helix	70	88	0.91
Non-Cytoplasmic	89	98	0.81
Transmembrane Helix	99	121	0.88
Cytoplasmic	122	264	0.91
Transmembrane Helix	265	288	0.90
Non-Cytoplasmic	289	455	0.68