YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28317218
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVTSGFSARK GERPEFYKML SLDVLLLCAI SGFQLLISAD GDPMIEVFKW KQLDFYNRGD  60
   61 GYKDLWNRIC IPDSHFYNSR KCLGSSSSGS FIQYNNVPQG VTHFRGRLFV TVPRRQPGIP 120
  121 STLNYIDLAK DGWSQSPHLR AYPNLAVNQY NASEQNLVSV YRTSVDVCGR LWFVDTGMLE 180
  181 FPNNRQQIRH PSIWVIDLAN DRLLKRFEIP QSIVEIGRGL ASITIDVGAR RCNDAYAYIP 240
  241 DLVNRRLHVY HLRSDRIWSF EHSFFNFDPL SDNLNIGGQT FRWDDGIFSA TLGSYKPDGS 300
  301 RDVFFHPMAS TNEFVVSNRV LQQEFNAARS DHGDDFHLLG TRGPSTQSTM HKYDPRTGVI 360
  361 FFAEVQKSGV GCWKTSKPFS TENHGSVYSN SSEMIYPSDL TIDEEGYIWV MSNSMPIFVY 420
  421 SKLDVEKYNF RIWRQSTLLA KRGTVCE

Type	Start	End	Confidence
Cytoplasmic	1	18	0.64
Transmembrane Helix	19	37	0.66
Non-Cytoplasmic	38	447	0.99