YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28317187
Protein type:	Transmembrane
Type Confidence:	0.56
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RTCLHFTSAV CSRVFCCSPA ASAPAPSPES SDIRLWKTKA MSKSILVISC LLLVAISNSL  60
   61 VRAEDLKVEV ISTPEVCEQK SKNGDSLTMH YTGTLQADGK KFDSSFDRDQ PFTFQLGAGQ 120
  121 VIKGWDQGLL NMCVGEKRKL TIPPQLGYGD QGAGNVIPPK ATLLFDVELI NIGNAPPTTN 180
  181 VFKEIDDNAD KQLSREEVSE YLKKQMTAVE GQDSEELKNM LAENDKLVEE IFQHEDKDKN 240
  241 GFISHDEFSG PKHDEL

Type	Start	End	Confidence
Cytoplasmic	1	43	0.50
Transmembrane Helix	44	61	0.52
Non-Cytoplasmic	62	256	0.97