YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28317050
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.84
Transmembrane Helix	33	54	0.83
Cytoplasmic	55	63	0.78
Transmembrane Helix	64	81	0.90
Non-Cytoplasmic	82	86	0.82
Transmembrane Helix	87	109	0.93
Cytoplasmic	110	118	0.87
Transmembrane Helix	119	140	0.93
Non-Cytoplasmic	141	149	0.80
Transmembrane Helix	150	174	0.84
Cytoplasmic	175	241	0.98
Transmembrane Helix	242	261	0.92
Non-Cytoplasmic	262	282	0.95
Transmembrane Helix	283	304	0.94
Cytoplasmic	305	311	0.80
Transmembrane Helix	312	334	0.89
Non-Cytoplasmic	335	462	0.93
Transmembrane Helix	463	483	0.92
Cytoplasmic	484	502	0.76
Transmembrane Helix	503	524	0.87
Non-Cytoplasmic	525	533	0.64
Transmembrane Helix	534	553	0.94
Cytoplasmic	554	651	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLGFPTIVI PAIQGGEGRS ETSGDILLNK DEISWFSSIN LICVPLGCLF SGLLTQPLGK  60
   61 RRAMQFVNLP ILAAWLMFHF ATRTEHLYAA LCLAGLGGGL MEAPVLTYVA EITEPKYRGI 120
  121 LSALGTTCVI TGVFIQFILG SLMDWRSVAA VSSAFPVITI IMLCFVPESP VWLIREQRFR 180
  181 EAMKSLQWLR GWVPEHMIEA EFNQLYDELI TQKAIELSAD GIPPPGQRRT LGQRLRMWRK 240
  241 RSFLVPFLLV SFSFFTGHFS GKTPLQTYAV QIFHTLKAPM NKYHATILLG VAEMLATILG 300
  301 VVLIHFTGKR PLVLVSTVGT GLCFFGTATY AHFLSEVPGF TVNNVVVNAS SIMPKEGILS 360
  361 QQNISKIFET EQQAIRQETE RFTTQLPDIE TTTLFDQEIY NRSRRDVVEM MTTDAPMDTT 420
  421 MWPEPSSSPE PIASSSLAPP STSVKPPLVE ELLLVVPKQE HNYLVWVPLI LLLLSAFFSH 480
  481 LGIRMLPWIL IGEVFPAEIR NSASGFAGGV GYIFGFLANK LFLLMLSALT LPGTFAFYAS 540
  541 VAFFGTVVLY FTLPETEGRT LGEIEAHFSK KSDVNLLRKQ PSNKLPIKDE AQFPGNTINM 600
  601 QGNFQVPITS TQQTKIIHLQ QSDFTPRSQN GRTAGVGLSN PAFEESNTTH L