YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28316986
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	57	0.96
Transmembrane Helix	58	77	0.92
Non-Cytoplasmic	78	85	0.81
Transmembrane Helix	86	106	0.91
Cytoplasmic	107	131	0.87
Transmembrane Helix	132	155	0.81
Non-Cytoplasmic	156	222	0.95
Transmembrane Helix	223	242	0.93
Cytoplasmic	243	251	0.81
Transmembrane Helix	252	273	0.93
Non-Cytoplasmic	274	299	0.89
Transmembrane Helix	300	321	0.89
Cytoplasmic	322	334	0.85
Transmembrane Helix	335	355	0.90
Non-Cytoplasmic	356	397	0.92
Transmembrane Helix	398	421	0.89
Cytoplasmic	422	430	0.82
Transmembrane Helix	431	451	0.95
Non-Cytoplasmic	452	463	0.86
Transmembrane Helix	464	487	0.90
Cytoplasmic	488	505	0.96
Transmembrane Helix	506	527	0.94
Non-Cytoplasmic	528	543	0.84
Transmembrane Helix	544	564	0.92
Cytoplasmic	565	629	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDLKTEILV SGGLPKLETS RCAGSGEALL KPSLLPMALE SSELSPDRKA RDNWGSSLEF  60
   61 LMSCIALSVG LGNVWRFPFT ALENGGGAFL IPYLVVLFVV GKPIYYMEML LGQFSSRGIV 120
  121 QVFDFAPLMR GVGYAQLLAL GVLATYYASV MALTLRYFFD SFASELPWSF CREEWGDGCV 180
  181 SASGGQPLQG QLSRNFSSST QLYLQRIVLN ETDSLEKGIG YPSGSLALML GISWLTVTLI 240
  241 IIRGVKSSGK AAYVLALFPY VVMFILLVRA LTLPGAYDGV MYFLTPQWEK LLEPQVWYNA 300
  301 VTQVFFSLAV CFGVIIMYSS YNRFGHNVYR DANIVTTLDT FTSLLSGVII FGILGNLAHE 360
  361 SGTKDIASVV KAGPGLAFIS YPDAIAKFKM FPQVFSLLFF AMLFMLGVGS NVGMVSCIMT 420
  421 VLKDQFVNVK LWIIVVSLSV IGFLVGLIYI TPGGQHIITL MDFHGVTFVS LVSAIFELIA 480
  481 VGWIYGTKRL CQDAEYMLNI KTSNYYRICW SIVTPLVMLV ILVYSLLTMR PLSYNGQEFP 540
  541 LVYRVVGWCV SGCIIGQLFY WAGYANFKQP KGSLKSRINN SIKPHSDWGP SDPKKLMDYQ 600
  601 MFLRNKDEEN SKNVNRRCVC YTAGDRIFG