YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28316972
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.92
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	34	0.91
N-region	1	25
H-region	26	31
C-region	32	34
Cleavage Site	34	35
Non-Cytoplasmic	35	434	0.99
Transmembrane Helix	435	457	0.90
Cytoplasmic	458	466	0.88
Transmembrane Helix	467	488	0.88
Non-Cytoplasmic	489	510	0.89
Transmembrane Helix	511	533	0.91
Cytoplasmic	534	552	0.93
Transmembrane Helix	553	576	0.93
Non-Cytoplasmic	577	607	0.93
Transmembrane Helix	608	630	0.94
Cytoplasmic	631	649	0.88
Transmembrane Helix	650	674	0.86
Non-Cytoplasmic	675	683	0.92
Transmembrane Helix	684	706	0.92
Cytoplasmic	707	765	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVYGRSIAVG FCLMTVVLLL AAVIFYLSLG PCPAASFACD NGTLCVPRRQ MCDSRNDCAD  60
   61 SSDENPVECG LLYGSKEIAD KIVRNAIEKK QQRLISAVSN ASGADSTTSM VPRNQSLTLN 120
  121 MTCDIVTYPK ACQCGQGTIL YCGRYAKLRR FPRLSSEVTN LIIIRNNLTL RDNIFANFTR 180
  181 LQKLTLKYNN ISRVPLGSFS GLFHLEHLEL SHNNVSHLPH GVFLGLHSLQ WLFLVNNHLH 240
  241 HLPVEQLRFF RRLEWLVLSR NRLTLRNVQL PKIPTLYEVY LDFNRIEYIG EETFSQLDNL 300
  301 HLLDLQHNLI THIHGRAFAN LTNMRDIRLV GNPIKELSGE TFLHNTRLEA LSLALMPIHI 360
  361 SSSLMEPLNI SFLNLTGIRY DHIDFEAINS MRNLTYIIYD RFFYCSMTPR VRMCKPSTDG 420
  421 VSSFQDLLSK PVLRYSAWVM ATLTIAGNVL VLWGRFIYRD ENVAVTMVIR NLALADMLMG 480
  481 FYLVTIGVQD YRYRNEYYKV VLDWITSWQC TLIGTLAVSS SEVSILILAF MSLERFLLIA 540
  541 DPFRGHRSIG NRVMWLALIC IWITGVGLAV APVLLWRTST LPYYGSYSGT CFPLHIHEAF 600
  601 PMGWLYSAFV FLGVNLLLLV MIAMLYTALL ISIWRTRSAT PLTLLDCEFA VRFFFIVLTD 660
  661 FLCWVPIIVM KIWVFFNYNI SDDIYAWLVV FVLPLNSAVN PLLYTFTTPK YRNQIFLRGW 720
  721 KKITSRKRAE AGNGNVATTT TGTATGSSQH PDDFTIFAKA AMRCH