YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28316939
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	55	0.94
Transmembrane Helix	56	75	0.86
Non-Cytoplasmic	76	126	0.91
Transmembrane Helix	127	148	0.86
Cytoplasmic	149	156	0.85
Transmembrane Helix	157	180	0.84
Non-Cytoplasmic	181	191	0.74
Transmembrane Helix	192	215	0.89
Cytoplasmic	216	226	0.84
Transmembrane Helix	227	248	0.90
Non-Cytoplasmic	249	254	0.82
Transmembrane Helix	255	276	0.95
Cytoplasmic	277	316	0.96
Transmembrane Helix	317	336	0.90
Non-Cytoplasmic	337	359	0.86
Transmembrane Helix	360	380	0.93
Cytoplasmic	381	386	0.89
Transmembrane Helix	387	405	0.93
Non-Cytoplasmic	406	412	0.64
Transmembrane Helix	413	432	0.85
Cytoplasmic	433	447	0.83
Transmembrane Helix	448	471	0.92
Non-Cytoplasmic	472	479	0.89
Transmembrane Helix	480	501	0.93
Cytoplasmic	502	516	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPHAHENLVA KAQRSGDADP EVASTASEKQ RSSGASAIAV GTELPRNPQA SRPQSLGMYL  60
   61 LEPFILILLF AYNFSSTVLK NEVIYQSCTA GFGYPDSVCQ LLGTKNITNE TKRIEEQVQP 120
  121 YAAQVTLAMR LVECFIPAFC GLFAGSWADH YGRKPLLMCS FLGYGLQYLI SAAISYCAMY 180
  181 TQGLVSPWWY VLSIVPLSCL GSSVTYSVAA VCFIADVSGG KVRFYRMIAY ELAIYVGLLL 240
  241 GSLGSGYAYE ATDAYIVFSI SAVCIFTALF LMALLLPESL PARNRTLSTP TTDTSVVSML 300
  301 KSLWSTCSKP REHQNRFMLT TIMVVLLLTA FVSDGSNSVF YKFMRIKFHW TVKQFTEYET 360
  361 VGILVPAVAG SGGVLFIWSL RKCTNSAILW LALVSLLSHG SSSLMKGFAL ESWQIYVAIG 420
  421 LGVFKSLVNP MCRTMITNLL PADERGKIFA LLGVLQALSP LISSTLYVAI YTRTLNTEPG 480
  481 IFNVFSAFLF GIGIILLGTV WHKKSRNLVY YEPVFK