YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28316839
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	95	0.91
Transmembrane Helix	96	114	0.75
Non-Cytoplasmic	115	139	0.65
Transmembrane Helix	140	160	0.62
Cytoplasmic	161	167	0.68
Transmembrane Helix	168	190	0.83
Non-Cytoplasmic	191	197	0.56
Transmembrane Helix	198	220	0.74
Cytoplasmic	221	228	0.87
Transmembrane Helix	229	252	0.89
Non-Cytoplasmic	253	259	0.82
Transmembrane Helix	260	279	0.95
Cytoplasmic	280	325	0.95
Transmembrane Helix	326	345	0.92
Non-Cytoplasmic	346	365	0.84
Transmembrane Helix	366	384	0.93
Cytoplasmic	385	400	0.79
Transmembrane Helix	401	419	0.93
Non-Cytoplasmic	420	425	0.74
Transmembrane Helix	426	446	0.94
Cytoplasmic	447	454	0.85
Transmembrane Helix	455	478	0.88
Non-Cytoplasmic	479	489	0.82
Transmembrane Helix	490	511	0.92
Cytoplasmic	512	632	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGLTAFKEK ATGVFGGLKP NMEKFEISQS YHGGHGGYEE MEGGDREGRG PGGGHAYDDD  60
   61 DDRPDSPASF EEIERPPLRK IDKYCKAECP CMPARYTIAT MACVGFMIAF GMRCNMSAAK 120
  121 LKGEHNGTVF MNWTVAVESH VDSSFFWGYL VTQIPGGFIA SKFPANKIFG LSIVSSATLH 180
  181 LFVPFAMTLM HGHVVICVRV LQGLFEGVTY PACHGIWRFW APPMERSGLA TLAFSGSYAG 240
  241 VVVGLPLSGL LADAVGYQAP FYAYGVFGII WYMFWIWLCF ENPRKHPAIS IPELKYIEKS 300
  301 LGESAHPTMP SLKTTPWREM MRSMPVYAII VANFCRSWNF YLLVLFQSSF LKHKFGFKVE 360
  361 EAGFVGSLPH LIMTTIVPFG GMLADHLRKN GILSTTNVRK LFNCGGFGME GLFFLFVAHS 420
  421 STATGAMFAL TCGVAFSGFA ISGYNVNHLD IAPRYASILM GLSNGIGTLA GIIVPYALDG 480
  481 LIQANPTGCW TTVFTLAACV HLVGCTFYGI FASGELQPWA EPPAEEQKVW APPPGAITNT 540
  541 DPSQAGMLGD YMKETSFGAP EYTEQSQMQQ STAISYGATG HVANNPFAMA SGAPPIAEED 600
  601 APPTYGDVTN PGQYGYTQGQ MPSYDPQGYQ QQ