YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BGAT1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLRGRPKCY SLHLGILPFI VLVLVFFGYG FLSHKIQEFR NPGGETCMAT RQTDVQKVVS  60
   61 VPRMAYPQPN VLTPIRNDVL VFTPWLAPII WEGTFNIDIL NEQFKLQNTT IGLTVFAIKK 120
  121 YVVFLKLFLE TAEQHFMVGH KVIYYVFTDR PSDVPQVPLG AGRKLVVLTV RNYTRWQDVS 180
  181 MHRMEMISHF SEQRFQHEVD YLVCGDVDMK FSDHVGVEIL SALFGTLHPG FYRSRRESFT 240
  241 YERRPKSQAY IPRDEGDFYY AGGFFGGSVV EVHHLTKACH QAMVEDQANG IEAVWHDESH 300
  301 LNKYLLYHKP TKVLSPEYVW DQKLLGWPSI MKKLRYVAVP KNHQAIRN

Type	Start	End	Confidence
Cytoplasmic	1	9	0.95
Transmembrane Helix	10	32	0.93
Non-Cytoplasmic	33	348	0.98