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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|31792941, gi|...
Protein type: Transmembrane
Type Confidence: 0.93
Topology Confidence: 0.45
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFSVLPPEI NSALIFAGAG PEPMAAAATA WDGLAMELAS AAASFGSVTS GLVGGAWQGA  60
   61 SSSAMAAAAA PYAAWLAAAA VQAEQTAAQA AAMIAEFEAV KTAVVQPMLV AANRADLVSL 120
  121 VMSNLFGQNA PAIAAIEATY EQMWAADVSA MSAYHAGASA IASALSPFSK PLQNLAGLPA 180
  181 WLASGAPAAA MTAAAGIPAL AGGPTAINLG IANVGGGNVG NANNGLANIG NANLGNYNFG 240
  241 SGNFGNSNIG SASLGNNNIG FGNLGSNNVG VGNLGNLNTG FANTGLGNFG FGNTGNNNIG 300
  301 IGLTGNNQIG IGGLNSGTGN FGLFNSGSGN VGFFNSGNGN FGIGNSGNFN TGGWNSGHGN 360
  361 TGFFNAGSFN TGMLDVGNAN TGSLNTGSYN MGDFNPGSSN TGTFNTGNAN TGFLNAGNIN 420
  421 TGVFNIGHMN NGLFNTGDMN NGVFYRGVGQ GSLQFSITTP DLTLPPLQIP GISVPAFSLP 480
  481 AITLPSLTIP AATTPANITV GAFSLPGLTL PSLNIPAATT PANITVGAFS LPGLTLPSLN 540
  541 IPAATTPANI TVGAFSLPGL TLPSLNIPAA TTPANITVSG FQLPPLSIPS VAIPPVTVPP 600
  601 ITVGAFNLPP LQIPEVTIPQ LTIPAGITIG GFSLPAIHTQ PITVGQIGVG QFGLPSIGWD 660
  661 VFLSTPRITV PAFGIPFTLQ FQTNVPALQP PGGGLSTFTN GALIFGEFDL PQLVVHPYTL 720
  721 TGPIVIGSFF LPAFNIPGID VPAINVDGFT LPQITTPAIT TPEFAIPPIG VGGFTLPQIT 780
  781 TQEIITPELT INSIGVGGFT LPQITTPPIT TPPLTIDPIN LTGFTLPQIT TPPITTPPLT 840
  841 IDPINLTGFT LPQITTPPIT TPPLTIDPIN LTGFTLPQIT TPPITTPPLT IDPINLTGFT 900
  901 LPQITTPPIT TPPLTIEPIG VGGFTTPPLT VPGIHLPSTT IGAFAIPGGP GYFNSSTAPS 960
  961 SGFFNSGAGG NSGFGNNGSG LSGWFNTNPA GLLGGSGYQN FGGLSSGFSN LGSGVSGFAN1020
 1021 RGILPFSVAS VVSGFANIGT NLAGFFQGTT S

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle