YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14091580
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGGGGSTS GEGPRELDQT PTWAVSTVCG VIILISIVLE LMIHKIGEVF TERRKKALYE  60
   61 ALQKIKNELM VLGFISLLLT FGQNYIASLC VASRYGHAMS FCGPYDGPSG ESKKPKTTEH 120
  121 LERRVLADAA PAQCKKGYVP LISLNALHQV HIFIFFLAVF HVIYSAITMM LGRAKIRGWK 180
  181 VWEEEVINDH EMMNDPSRFR LTHETSFVRE HVNPWAKNRF SFYVMCFFRQ MLRSVRKSDY 240
  241 LTMRHGFISV HLAPGMKFNF QKYIKRSLED DFKVVVGISP ELWAFVMLFL LFDVHGWYVT 300
  301 AVITMIPPLL TLAIGTKLQA IISDMALEIQ ERHAVIQGMP LVNVSDRHFW FSRPALVLHI 360
  361 IHFILFQNAF EITYFFWIWY EFGLRSCFHH HFALIIIRVA LGVGVQFLCS YITLPLYALV 420
  421 TQMGSTMKRS VFDDQTSKAL KNWHKNAKKK SETPGQTPPL PNLRPKTGGD IESASPANIT 480
  481 ASVDVKESDQ SQSRDLLSGP

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.96
Transmembrane Helix	21	44	0.90
Cytoplasmic	45	68	0.88
Transmembrane Helix	69	89	0.87
Non-Cytoplasmic	90	149	0.94
Transmembrane Helix	150	172	0.90
Cytoplasmic	173	271	0.95
Transmembrane Helix	272	292	0.78
Non-Cytoplasmic	293	296	0.67
Transmembrane Helix	297	318	0.81
Cytoplasmic	319	354	0.83
Transmembrane Helix	355	378	0.85
Non-Cytoplasmic	379	393	0.76
Transmembrane Helix	394	419	0.86
Cytoplasmic	420	500	0.88