YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20269372
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGTEGPYFY VPMVNTTGIV RSPYDYPQYY LVNPAAYAAL GAYMFLLILV GFPVNFLTLY  60
   61 VTLEHKKLRT PLNYILLNLA VANLFMVFGG FTTTMYTSMH GYFVLGRLGC NLEGFFATLG 120
  121 GEIGLWSLVV LAVERWMVVC KPISNFRFGE NHAIMGLGWT WIGASACAVP PLVGWSRYIP 180
  181 EGMQCSCGVD YYTRAEGFNN ESFVIYMFVC HFLIPLTIVF FCYGRLLCAV KEAAAAQQES 240
  241 ETTQRAEREV TRMVVIMVIG FLICWLPYAS VAWYIFLNQG SEFGPLLMTI PAFFAKSSAV 300
  301 YNPLIYIFMN KQFRNCMITT LCCGKNPFEE EEGASSTKTE ASSASSSSVS PA

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.89
Transmembrane Helix	39	61	0.90
Cytoplasmic	62	73	0.86
Transmembrane Helix	74	95	0.92
Non-Cytoplasmic	96	113	0.88
Transmembrane Helix	114	133	0.90
Cytoplasmic	134	152	0.81
Transmembrane Helix	153	174	0.91
Non-Cytoplasmic	175	203	0.95
Transmembrane Helix	204	227	0.88
Cytoplasmic	228	252	0.93
Transmembrane Helix	253	276	0.88
Non-Cytoplasmic	277	285	0.86
Transmembrane Helix	286	308	0.82
Cytoplasmic	309	352	0.92