YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CRLC_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIEESQICN PSDREFLSVD ILNIVTSSLS LMGSALTIIS YIWKKVRRHR IQKQQIQQQQ  60
   61 QQIEKGGLLS SSITIGNGSS HYGGIGGGGG SGNGTGIGAI GGPHGTYKQP TSKLPLLIFM 120
  121 LSIADFFTSF FIIISQSYLI NNSKSYSTPY SPDLKIHFSP CIILRAIIQF FFLSTFFWTT 180
  181 CISYYLFHQL SSPGEEKYLL AIFNVVSWGI PFAISMVITM TNSIVVNSDG WCEVAKPMEL 240
  241 SLWFLPLFLC LLVCSIYYFR LRRLFRSKFE YRLQINDRLK QLDSTISRRL TLYIVVFVIC 300
  301 WLPDVIQHFI SFFSKCTFFP LLILQNILTP SQGFWNFWIY SYTNKIARFT PSNDENKRLL 360
  361 Q

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.79
Transmembrane Helix	21	43	0.90
Cytoplasmic	44	115	0.77
Transmembrane Helix	116	140	0.85
Non-Cytoplasmic	141	165	0.89
Transmembrane Helix	166	187	0.90
Cytoplasmic	188	197	0.94
Transmembrane Helix	198	221	0.89
Non-Cytoplasmic	222	239	0.92
Transmembrane Helix	240	259	0.95
Cytoplasmic	260	289	0.92
Transmembrane Helix	290	310	0.90
Non-Cytoplasmic	311	317	0.80
Transmembrane Helix	318	339	0.73
Cytoplasmic	340	361	0.77