YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48138880, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.53
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHTTPMIAFD RQQKMRLWVI ICALVVAIHA SIAEMPRNKN RGRGSMWWGI AKAGEPNNFL  60
   61 PMSPASLHMD PTVYATLRRK QRRLARENPG VLMAVARGAN QAIAECQHQF RNRRWNCSTK 120
  121 NFLRGKNLFG KIVDRGCRET AFIYAITSAA VTHSIARACS EGSIQSCSCD YTHQSRPPST 180
  181 TRDWEWGGCS DNIGYGFKFS REFVDTGERG RNLREKMNLH NNEAGRAHVS SEMRQECKCH 240
  241 GMSGSCTVKT CWMRLPNFRV VGDNLKDRFD GASRVMVSNS DRVRGNGNAI VSNSASNSVH 300
  301 GHREGLGRRH RYNFQLKPYN PEHKPPGPKD LVYLEPSPPF CEKNPKLGIL GTHGRQCNDT 360
  361 SIGVDGCDLM CCGRGYKTQE VTVVERCACT FHWCCEVKCQ LCKIKKTIHT CL

Type	Start	End	Confidence
Cytoplasmic	1	14	0.49
Transmembrane Helix	15	33	0.50
Non-Cytoplasmic	34	412	0.97