YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20260272
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.96
Transmembrane Helix	28	48	0.93
Non-Cytoplasmic	49	68	0.85
Transmembrane Helix	69	92	0.87
Cytoplasmic	93	99	0.83
Transmembrane Helix	100	120	0.89
Non-Cytoplasmic	121	127	0.68
Transmembrane Helix	128	146	0.89
Cytoplasmic	147	156	0.73
Transmembrane Helix	157	176	0.82
Non-Cytoplasmic	177	182	0.71
Transmembrane Helix	183	203	0.92
Cytoplasmic	204	264	0.97
Transmembrane Helix	265	287	0.88
Non-Cytoplasmic	288	300	0.87
Transmembrane Helix	301	321	0.92
Cytoplasmic	322	328	0.88
Transmembrane Helix	329	350	0.94
Non-Cytoplasmic	351	361	0.81
Transmembrane Helix	362	386	0.87
Cytoplasmic	387	394	0.79
Transmembrane Helix	395	416	0.85
Non-Cytoplasmic	417	423	0.63
Transmembrane Helix	424	444	0.66
Cytoplasmic	445	479	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVEEENRSM EEGLLQHQND RDDRRITACV ILSTFVAICS AFSYGCAAGY TSGAETAIMK  60
   61 ELDLSMAQFS AFGSFLNVGG AVGALFSGQL AVILGRRRTL WACDFFCVFG WLSIAFAKNV 120
  121 FWLDLGRISL GIGVGLISYV VPVYIAEITP KHVRGAFTAS NQLLQNSGVS LIYFFGTVIN 180
  181 WRVMAVIGAI PCILQTIGIF FIPESPRWLA KIRLSKEVES SLHRLRGKDT DVSGEAAEIQ 240
  241 VMTKMLEEDS KSSFSDMFQK KYRRTLVVGI GLMLIQQLSG ASGITYYSNA IFRKAGFSER 300
  301 LGSMIFGVFV IPKALVGLIL VDRWGRRPLL LASAVGMSIG SLLIGVSFTL QQMNVLPELI 360
  361 PIFVFVNILV YFGCFAFGIG GLPWVIMSEI FPINIKVSAG TIVALTSWTS GWFVSYAFNF 420
  421 MFEWSAQGLY FLYYFFINLD KTIYQKKLRV IFIKIHKSNI KLFKNRVRIL TFVSNSFRC