YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22331775, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEARVGVVVE GGQRALNTAT TTAVHNTVVD AGNRKLLQQQ PQTQQTQSCH QHHQSNKQSL  60
   61 NQQQGHFGTV ERLLAGGIAG AFSKTCTAPL ARLTILFQIQ GMQSEAAILS SPNIWHEASR 120
  121 IVKEEGFRAF WKGNLVTVAH RLPYGAVNFY AYEEYKTFLH SNPVLQSYKG NAGVDISVHF 180
  181 VSGGLAGLTA ASATYPLDLV RTRLSAQRNS IYYQGVGHAF RTICREEGIL GLYKGLGATL 240
  241 LGVGPSLAIS FAAYETFKTF WLSHRPNDSN AVVSLGCGSL SGIVSSTATF PLDLVRRRMQ 300
  301 LEGAGGRARV YTTGLFGTFK HIFKTEGMRG LYRGIIPEYY KVVPGVGIAF MTFEELKKLL 360
  361 STVPN

Type	Start	End	Confidence
Cytoplasmic	1	229	0.73
Transmembrane Helix	230	253	0.86
Non-Cytoplasmic	254	270	0.89
Transmembrane Helix	271	292	0.89
Cytoplasmic	293	365	0.87