YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48479770
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	56	0.56
Transmembrane Helix	57	76	0.68
Cytoplasmic	77	109	0.70
Transmembrane Helix	110	129	0.61
Non-Cytoplasmic	130	142	0.60
Transmembrane Helix	143	165	0.81
Cytoplasmic	166	175	0.51
Transmembrane Helix	176	210	0.68
Non-Cytoplasmic	211	226	0.47
Transmembrane Helix	227	260	0.76
Cytoplasmic	261	280	0.61
Transmembrane Helix	281	305	0.86
Non-Cytoplasmic	306	600	0.73
Transmembrane Helix	601	622	0.94
Cytoplasmic	623	640	0.82
Transmembrane Helix	641	661	0.88
Non-Cytoplasmic	662	669	0.64
Transmembrane Helix	670	688	0.92
Cytoplasmic	689	698	0.80
Transmembrane Helix	699	721	0.89
Non-Cytoplasmic	722	741	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVASTTSANV GSDLRRRNVH AGEKVDKLFS SHNSEDKDKD AKSRPQANSF YTILDSWEPF  60
   61 IAPIVLTAFA VFTRMYRIGR SNIVTWDEAH FGKFGSHYLK REFYFDVHPP LGKMLVGLSG 120
  121 LLAGYNGSFE FKSGEKYPED VNFTFMRVFN AAFGVACVPL AYYTARELGF RKATVWLISL 180
  181 MVLFENSYAT ISRFILLDSM LLCFTFMTTM CWAKFHRLQH ASFSGQWFTW LFLTGISIGC 240
  241 VCSVKWVGLF CTALVGLYTI EDLWNKFGDL RMPKTVLVNH LLARVVGLII IPAVVYMLSF 300
  301 YVHFWILENS GPGDAQMSSL FQANLKGTEV GKDSPLEIAV GSRVTLKNMG YGGGLLHSHV 360
  361 QTYPDGSNQQ QVTCYHHKDA NNDWFIYPNR HEPEYDASGP LSFVGDGDVI RLIHGQTGRN 420
  421 LHSHAIPAPI TKSQYEVSCY GNITIGDEKD HWAVEVVDDV ASRDRSRIRT LTTAFRLRHI 480
  481 VLGCYLRAGN VNLPQWGFKQ IETTCVKENN PRDVYTHWNV ESHFNDRLPP GDPGSYKSPF 540
  541 FKDFIHLNVA MMTSNNALVP DPDKQDDLAS KFWQWPILNV GLRMCSWDDN TIKYYLLGNP 600
  601 FVYWGSTFSL GVFGLLIFWY LARWQRGYKD LNQADIDHIH YSGFYPLLGW ILHYFPFIIM 660
  661 ARVTYVHHYY PALYYAILTF GFCVDWLTQK MSPVARGSLY AFLYVIIIGM FVHFRVIVFG 720
  721 IEGPSQQWAN LNWLSGWRIA N