YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15778837
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGAAEPEFL RDVRHTAHWT PLHGDCAVVL LAALSCLTHL HHNPHRTRSR MSLLESIAVA  60
   61 INLLGVWLTA RRIRWCWPVG IVAVALYAWL FYQWKLYSDM LLQGVYVLTQ LYGWWHWQRG 120
  121 SPADTRIRPL PMPVMECWLS LCIGAAFAAS LGAYMHYRTD AALPWLDAAL ASFSLVASLW 180
  181 AARKRIANWV LWIVLDCVYV GVFISKGLHP TAALYAGFVA LAVYGWRSWK TQQNPNLASA 240
  241 R

Type	Start	End	Confidence
Cytoplasmic	1	20	0.63
Transmembrane Helix	21	42	0.89
Non-Cytoplasmic	43	50	0.51
Transmembrane Helix	51	68	0.66
Cytoplasmic	69	74	0.71
Transmembrane Helix	75	92	0.92
Non-Cytoplasmic	93	99	0.73
Transmembrane Helix	100	117	0.91
Cytoplasmic	118	136	0.86
Transmembrane Helix	137	155	0.95
Non-Cytoplasmic	156	161	0.79
Transmembrane Helix	162	181	0.93
Cytoplasmic	182	188	0.75
Transmembrane Helix	189	205	0.89
Non-Cytoplasmic	206	210	0.66
Transmembrane Helix	211	229	0.83
Cytoplasmic	230	241	0.82