YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1817522
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSALSTLKKR LAACNRASQY KLETSLNPMP TFRLLRNTKW SWTHLQYVFL AGNLIFACIV  60
   61 IESPGFWGKF GIACLLAIAL TVPLTRQIFF PAIVIITWAI LFYSCRFIPE RWRPPIWVRV 120
  121 LPTLENILYG SNLSSLLSKT THSILDILAW VPYGVMHYSA PFIISFILFI FAPPGTLPVW 180
  181 ARTFGYMNLF GVLIQMAFPC SPPWYENMYG LEPATYAVRG SPGGLARIDA LFGTSIYTDC 240
  241 FSNSPVVFGA FPSLHAGWAM LEALFLSHVF PRYRFCFYGY VLWLCWCTMY LTHHYFVDLV 300
  301 GGMCLAIICF VFAQKLRLPQ LQTGKILRWE YEFVIHGHGL SEKTSNSLAR TGSPYLLGRD 360
  361 SFTQNPNAVA FMSGLNNMEL ANTDHEWSVG SSSPEPLPSP AADLIDRPAS TTSSIFDASH 420
  421 LP

Type	Start	End	Confidence
Cytoplasmic	1	42	0.93
Transmembrane Helix	43	66	0.83
Non-Cytoplasmic	67	87	0.66
Transmembrane Helix	88	107	0.90
Cytoplasmic	108	115	0.80
Transmembrane Helix	116	137	0.58
Non-Cytoplasmic	138	153	0.63
Transmembrane Helix	154	173	0.88
Cytoplasmic	174	183	0.55
Transmembrane Helix	184	205	0.78
Non-Cytoplasmic	206	245	0.81
Transmembrane Helix	246	266	0.76
Cytoplasmic	267	274	0.65
Transmembrane Helix	275	293	0.81
Non-Cytoplasmic	294	298	0.61
Transmembrane Helix	299	318	0.90
Cytoplasmic	319	422	0.89