YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74676144, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNESNDLEK NISHLDPTGV DNAYIPPEQP ETKHSRFNID RDTLRNHFIA AVGEFCGTFM  60
   61 FLWCAYVICN VANHDVALTT EPEGSHPGQL IMIALGFGFS VMFSIWCFAG VSGGALNPAV 120
  121 SLSLCLARAI SPARCVVMWF PQIIAGMAAG GAASAMTPGK VLFTNALGLG CSRSRGLFLE 180
  181 MFGTAVLCLT VLMTAVEKRE TNFMAALPIG ISLFMAHMAL TGYTGTGVNP ARSLGAAVAA 240
  241 RYFPHYHWIY WIGPLLGAFL AWSVWQLLQI LDYTTYVNAE KAAGQKKED

Type	Start	End	Confidence
Cytoplasmic	1	45	0.97
Transmembrane Helix	46	69	0.86
Non-Cytoplasmic	70	90	0.89
Transmembrane Helix	91	116	0.83
Cytoplasmic	117	134	0.75
Transmembrane Helix	135	156	0.90
Non-Cytoplasmic	157	175	0.82
Transmembrane Helix	176	196	0.92
Cytoplasmic	197	202	0.84
Transmembrane Helix	203	225	0.87
Non-Cytoplasmic	226	246	0.84
Transmembrane Helix	247	268	0.88
Cytoplasmic	269	289	0.87