YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90110008, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSNDSNDTD KQHTRLDPTG VDDAYIPPEQ PETKHHRFKI SRDTLRNHFI AAVGEFCGTF  60
   61 MFLWCAYVIC NVANHDVALV AAPDGSHPGQ LIMIAIGFGF SVMFSIWCFA GVSGGALNPA 120
  121 VSLSLCLARA VSPTRCVVMW VSQIVAGMAA GGAASAMTPG EVLFANSLGL GCSRTRGLFL 180
  181 EMFGTAILCL TVLMTAVEKR ETNFMAALPI GISLFIAHVA LTAYTGTGVN PARSLGAAVA 240
  241 ARYFPHYHWI YWIGPLLGSI LAWSVWQLLQ ILDYTTYVTA EKAASTKEKA QKKVKPAVPL 300
  301 LWLKSNFPLL FFISRSLALN VIIFGKN

Type	Start	End	Confidence
Cytoplasmic	1	46	0.98
Transmembrane Helix	47	70	0.89
Non-Cytoplasmic	71	90	0.92
Transmembrane Helix	91	117	0.83
Cytoplasmic	118	135	0.81
Transmembrane Helix	136	157	0.91
Non-Cytoplasmic	158	176	0.85
Transmembrane Helix	177	197	0.93
Cytoplasmic	198	203	0.88
Transmembrane Helix	204	226	0.89
Non-Cytoplasmic	227	247	0.86
Transmembrane Helix	248	269	0.88
Cytoplasmic	270	301	0.88
Transmembrane Helix	302	324	0.60
Non-Cytoplasmic	325	327	0.58