YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26788035
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGGETAIGVY LVILGWLSWI GNGTVILLLT KQRKALEPQD FLTLNLAISD ASISIFGYSR  60
   61 GILEVFDVFR DEGYLIKTFW TCKVDGFLIL LFGLISINTL TAISVIRYIK GCHPHHVFAY 120
  121 VSIIRTVNSS HKSSQGGDVS ERQKKIERSI TRVSLILCAA FLLAWSPYAV ISMWSALGYQ 180
  181 IPPLNGILAS LFAKSASFYN PFIYIGMSSK FRKDLQALFY CLRPTSAHRP TPPAPLAQPA 240
  241 DVQLNVEDEP VEMDHNLSEH IYEEKAETPS EVECQNSPLI EPHNISPHGL MRKPSNSGRL 300
  301

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.91
Transmembrane Helix	7	29	0.93
Cytoplasmic	30	40	0.89
Transmembrane Helix	41	62	0.84
Non-Cytoplasmic	63	85	0.87
Transmembrane Helix	86	106	0.89
Cytoplasmic	107	149	0.94
Transmembrane Helix	150	171	0.89
Non-Cytoplasmic	172	183	0.73
Transmembrane Helix	184	205	0.83
Cytoplasmic	206	300	0.94