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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|22204233
Protein type: Transmembrane
Type Confidence: 0.82
Topology Confidence: 0.37
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQWEVLEAVI GQLNEPFQVT VQYSACSSHE VGFLAFDSLE LKNCVMGDDY VDLGSDCEKY  60
   61 SSLQCHSGGC IEKQRVCDFH TDCPEGEDEG LICKASPITW WFTSCGASGP FGPTQAQCDS 120
  121 AYRNTNVSVV VGKEGPLRGV QMWKVPATNT YKISAYGAAG GKGAKNHNKR SHGVFISATF 180
  181 PLEKGDILYI LIGHQGEDAC PGRNPQTHKI CLGESSVIED GFDSDGSALK WAGGGGGGGG 240
  241 ATYIYRMENG QPLPLLIAAG GGGKAYLEDP ESSQDQSFRE QYENDTTVSG VSGRSGAAGG 300
  301 GGGWSDVSSL SWAGKSLVEG GQGGSSCPEA LSVLGWATFG GFGGGGGACS AGGGGGGYRG 360
  361 GDAPLLDDIS ADGQDGLSFV HPMGKIFLQP LAAMESHGEA EIVVYLNCSH CKTQSCKRDE 420
  421 DTKLILCLCD SDEVLAPDNV TCAGTKHSLC QFINKHLQHN SSPLVCPPLV VPMGSLADGP 480
  481 PSLVFIMAVI VSTVVTGVVL TCASLTLIYY RKKNHLHAVR IRLQSPEYKL SKIRSSTIMT 540
  541 DYNPNYGYFG KAASLSELKE VPRKNITLLR ALGHGAFGEV YEGQVLGMNG ENTAMQVAIK 600
  601 TLPEICSEQD EMDFLMEALI MSKFSHQNIV RCIGVSLQIL PRFILLELMT GGDMKSFLRL 660
  661 NRPRTNHSSS LSMLELLHMA RDIALGCRYL EENHFIHRDI AARNCLLTCP GPDRVAKIGD 720
  721 FGMARDIYRA SYYRKGGRAM LPVKWMPPEA FLEGIFTCKT DTWSFGVLLW EIFSLGYMPY 780
  781 PCKTNQEVLE FVTGGGRMDP PKSCPGPVYR IMTQCWQHCP EHRPNFTTIL ERINYCTQDP 840
  841 DVINTPLPVE CGPPVEEEGG TVIRPDGSGS MTPLLVAHSL SQDASPRASI TSVTPQALKP 900
  901 RLQLQRPVHL TQEVGTYRET LEPCWAEPVP ASGVCPGPWL QVPEHRPCSR SSSSSGSQKL 960
  961 KNKTKNLWNP TYGSWVLESF GRGKSALCHT QSMPLSCNPT SVSAPSSTSE HTDPVVEVNA1020
 1021 NVSASPPPSA APSQTTLTPT AAPSRKSPTG AAGVSLATVM DLAKLQSFPC GNVNYAYDEQ1080
 1081 SYETESLPVV VSKSLEPSTS SAATSSLVAL SQASSFTHKP LVKRHASYGH EDVRRYTQPE1140
 1141 KPTRDRDSGF SLSEDLSVTP V

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle