YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29561823
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	34	0.94
Transmembrane Helix	35	54	0.88
Non-Cytoplasmic	55	65	0.78
Transmembrane Helix	66	84	0.95
Cytoplasmic	85	103	0.83
Transmembrane Helix	104	124	0.88
Non-Cytoplasmic	125	184	0.96
Transmembrane Helix	185	205	0.93
Cytoplasmic	206	213	0.88
Transmembrane Helix	214	236	0.85
Non-Cytoplasmic	237	266	0.87
Transmembrane Helix	267	285	0.96
Cytoplasmic	286	295	0.85
Transmembrane Helix	296	319	0.90
Non-Cytoplasmic	320	346	0.91
Transmembrane Helix	347	369	0.79
Cytoplasmic	370	398	0.87
Transmembrane Helix	399	421	0.90
Non-Cytoplasmic	422	430	0.79
Transmembrane Helix	431	454	0.89
Cytoplasmic	455	474	0.97
Transmembrane Helix	475	496	0.93
Non-Cytoplasmic	497	511	0.87
Transmembrane Helix	512	533	0.94
Cytoplasmic	534	543	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHSSRPAVK LNLLNGALVK ARPKPPAREQ WANKLEFLLA VAGHIIGLGN VWRFPYLCYK  60
   61 NGGGAFFVPY VLFLFTCGIP LFFLETSLGQ FTSQGGITCW RKICPLFEVY YIIILAWAFL 120
  121 YLFSSFTSEL PWASCNNYWN TPSCMEFSES NITEYSPNKT TSPVIEFWER RILGLSGGIE 180
  181 QIGNVRWDLA LCLLLAWIIC YFCVWKGVKS TGKVVYFTAT FPYLMLIVLL VRGLTLPGAI 240
  241 NGITFYLYPD PSRLKDPQVW MDAGSQIFYS YGVCTGVLTA LGSYNKYDNN CYRDCVYLCL 300
  301 LNSLTSFVAG FAIFSVLGFM ADEQGVDISL VAESGPGLAF IAYPRAVALM PLPQLWAIFF 360
  361 FIMIIFLGLD SEFVYQEALV TSISDMYPSF FQVGHRRKFL LLFICSASFF VGLLMVTEGG 420
  421 LYVFQLFDYY ACSGMTLLTF AILQSICVGW VYGADRHYDC VEDMIGYRPW PFMKCCWKYL 480
  481 TPAICTGTFI FSLVQYTPLK FNNEYEYPWW GYAIGGFFTL SSTLLVPLWM IYLVGTTPGS 540
  541 MRQ