YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26788068
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNLFMFACI LCVDIVIVYT LDLGGTLLKF PTRNMSYNLL RQWAESGLRC TLLYTGFTLS  60
   61 KNAAAPLIRR WVIVHCFIGS VYETLRFALF YYSLEKINSW IVGTMAAALA CIFWENMLPD 120
  121 SSTTNNEKEP KQRARVLLFR VIRLYKPDYL LLCGAFIFLA SAVLCEMFIP LYTGEAIDIL 180
  181 GSHYQWDNFR SVIFFMGLFS LGSSFSAGCR GGLFTCVIYS FIYRVKMLLF GSLVRQDIGF 240
  241 FETVKTGDIT SRLSTDTELM GDAVALNVNV FLRTLIKTMG VLYLMRLSKE VQDSLAQTNN 300
  301 AAAETVSSIR TVKSFRSELG EARRYDVCLI ETHNLKTRRD TVSAIYLLLT ELGMKVVMLY 360
  361 YGRLFIQYGQ MSTGNLVSFI LYQQDLGDNI RTLISIIGDM LNSVGAAGKV FEYLDRKSEV 420
  421 SIDGNLMPKD LKGHVKFQNL TFSYPRRPDH NVLKDFSLEL KPGQMTALVG ISGGGKSTCV 480
  481 SLLERFYQPQ QGHILLDGQP LQDYQHKYLH SKIAMVGQEP VLFSGTVRDN IAYGLQGCTM 540
  541 ERVIEAASKA NAHAFISKLE KGYDTVIKSG FVLSDVGERA NLLSGGEKQR IAIARALIRE 600
  601 PQVLILDEVT SSLDTESEQM VQQALSCCPA LTLLVIAHRL KTIERADQIV VIDSGELVEK 660
  661 GTHEELMDKK GSYYKLRERL FSDDKTTNQD KEKSDTVKTQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.53
Transmembrane Helix	5	26	0.73
Cytoplasmic	27	70	0.70
Transmembrane Helix	71	90	0.79
Non-Cytoplasmic	91	96	0.77
Transmembrane Helix	97	118	0.82
Cytoplasmic	119	148	0.94
Transmembrane Helix	149	171	0.93
Non-Cytoplasmic	172	191	0.90
Transmembrane Helix	192	223	0.78
Cytoplasmic	224	343	0.88
Transmembrane Helix	344	362	0.60
Non-Cytoplasmic	363	700	0.80