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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|26788046
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GIHQVTAFCT LRVTIITDEM LTNSITVRLE NMSQERFLSP LLSLFVKGVA AVLSTSREGV  60
   61 FIFNVQNDTD VSGNILNVTF SALLPGGVPD RYFPSEELQE QIYLNRTLLQ EISSQNVLPF 120
  121 DDNICLREPC ENYMKCVSVL KFDSSPPFIA SDTVLFRPIH PINGLRCRCE NCEVDSRSGR 180
  181 CVPGVCKNGG ECVNLLVGGF TCNCPSGEYE KPFCEMTTRS FPGQSFITFR GLRQRFHFTV 240
  241 SFMFATRERN ALLLYNGRFN EKHDFIAVEI IEEQIQLTFS AGESKTTVAP FVPGGVSDGQ 300
  301 WHSVQLHYYN KPKISHLGLP QGPSGEKVAV VAVDDCDIAM AVRFGTQIGN YSCAAQGTQT 360
  361 GQKKSLDLTG PLLLGGVPNL PEDFPIRNRD FVGCMRNLTI DSCPAKKNFC YEGLCQHGAQ 420
  421 CENKWNTHFC ECPEGRGGKN CDQDMPSRQH FDGHAMMLWN DPDMTIAVPW YIALMFRTRQ 480
  481 TSQTATLMQV NAGDTSQINL LKVAVLDFTD VRVNDGEWHH LLVELRSSKD GKDTKYMAQV 540
  541 LLDYDMFKKS VEIGNELPGL KLKSFFIGGL QGQRDIVQQG FKGCMQGLRM GETATSTANI 600
  601 NMHHAQKIRV EDGCDMSENC DAINCPENSQ CTDEHTCTCD PGFFGRDCVD ACHLNPCEHL 660
  661 STCVRKPSSS HGYTCECSQD YYGQYCENKV EKPCPRGWWG NPMCGPCNCD VSKGFNPDCN 720
  721 KTTGECRCKD NYYQPKDSDT CFPCDCFHLG ANSRTCDPET GQCPCKAGVI GRQCNRCDNP 780
  781 FSEVTSTGCE VGYEGCPKAF DSGIWWPRTN FGFPVAMNCP KGSIGTAVRH CNDEKGWLPP 840
  841 ELFNCTTITF SHLKKMNDDL HRNESSMDGQ KSRDIARMLH NATDQTSSFY GNDIKTTYHL 900
  901 LSSILRYESQ QQGFNLAAMR DAKFNENLVK AGSAILDASN KEHWDQIQRT EGGTANLLKH 960
  961 FEEYANTLAQ NMRKTYLKPF IIVTENMVFA VDYLVTYPDA TKVPNFQTTD QECPKDLKSS1020
 1021 VLFPEFSFKS SEHKDDPEFQ INSDEEEKQA TNKRKRHVET IPPFPVASVI IYKTLGQFLP1080
 1081 EHYDPDRRSL RVPNRPVINT PIVSATVYSE GQPLHIPLER PITLDYNLLE TEERTKPVCV1140
 1141 FWNHSITVGG AGAWSSKGCD IISRNHTHIS CQCNHMTSFA VLMDISKREH GDVLPLKIVT1200
 1201 YTTVSASLLA LFITFILLAI LHKLRSNLHS IHKNLVAALF FSELVFLIGI NQTDNPFVCT1260
 1261 VIAILLHYFY MCTFAWTFVE GLHIYRMLTE VRNINHGHMR FYYAIGWGIP AIITGLAVGL1320
 1321 DPQGYGNPDF CWLSVHDTLI WSFAGPIAVV VLVNIVIFVM AAKASCGRRQ RSYEKSGVTP1380
 1381 ALRMAFLLLL LISATWLLGL MAVNSDVMTF HYLFAIFSCL QGVFIFFFHI VFNKEVRKNL1440
 1441 KNVFTGKKQL PDESSTTRTT LLTRTLNCNN TYMEDGALFR SAIGESTVSL ESTVRSAKSH1500
 1501 SSYFTYTHRD ELGQKPSVSG NAKAGLTDID GSLFRNGTKA DDSDSDSELS VDEHSSSYAS1560
 1561 SHSSDSEDED IDMQPKWNNE RQPLHSTPKG TKEVDTVSNH VKPYWPTEAM TASDSEDPGG1620
 1621 AERLRVETKV NVELHQENKL NHIGESTQDK EQPTPSIQAN SNHQPEQRKG ILKNKITYPP1680
 1681 PLTDKNMKNK LREKLSDYNP PTISSRAPSI TSNDGGNGHN VLIKPPRPPV PPREHLNGMA1740
 1741 MNLKSATVNG GNQSDSDRKP KEPLPS

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