YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26984450
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.92
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKMSQKKLY SSLILILALF FVGESANVYY MYRVSRCIFS SSNISAMVYF DRTYFNKNLF  60
   61 IQFNSNLGRF EGFNEYGLKL AEFWNNGTFV DQEKDVVEFF CKYNSQIYEN SILDKAVKPK 120
  121 VKLSSVTRAG GRQSAVLMCS AYDFYPPHIN VYWLRNGEVM TSEVTSTMEM ADGDWYYQIH 180
  181 SELEYSPKPG ERISCVIEHA SSNKPMIYDW DPSLPVFERN KISIGVSAIV LGIITAAAGI 240
  241 IYYKKKTT

Type	Start	End	Confidence
Signal Peptide	1	25	0.95
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	221	0.99
Transmembrane Helix	222	243	0.91
Cytoplasmic	244	248	0.91