YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22204205
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VNKKLKYTSL AILVIQNASL ILSIRYVRTL PGDHFYTTSA VVMAEVLKVI TCLFIILIQK  60
   61 RGSVKSFVSL LYDSIVIQYW DTLKLAVPSL IYTLQNNLQY VAISNLPAAT FQVTYQLKIL 120
  121 TTALFSVLML RKSLSRIQWI SLVLLFAGVA IVQVEQESGK QKEAVTAANQ NYFKGLLSVI 180
  181 ISCLSSGFAG VYFEKILKGS SASVWMRNIQ LGIFGTVLGL LGMWWNDGAA IAEKGFLFGY 240
  241 TPMVWGVIFN QAFGGLLVAV VVKYADNILK GFATSFSIIV STITSVYLFG FHVDLVFTLG 300
  301 AGLVIGAVYM YSLPKANTST SSTSTASSSK AGESELDAFL PKSVLVK

Type	Start	End	Confidence
Cytoplasmic	1	6	0.93
Transmembrane Helix	7	27	0.85
Non-Cytoplasmic	28	34	0.81
Transmembrane Helix	35	58	0.87
Cytoplasmic	59	134	0.85
Transmembrane Helix	135	154	0.90
Non-Cytoplasmic	155	172	0.92
Transmembrane Helix	173	193	0.94
Cytoplasmic	194	203	0.89
Transmembrane Helix	204	225	0.89
Non-Cytoplasmic	226	240	0.83
Transmembrane Helix	241	262	0.90
Cytoplasmic	263	270	0.73
Transmembrane Helix	271	289	0.92
Non-Cytoplasmic	290	294	0.70
Transmembrane Helix	295	313	0.90
Cytoplasmic	314	347	0.89