YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25136607
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFSRVACLA MILSALLEKV CGNYGYLQSQ CRVLSSTKKV ELIFSFIFNK IEYIRYNSTD  60
   61 QKIVGYTEFG EKFVENYKNN TFVLVLAEFG IDNCKKIAKA LISDGMLNHV TVKPEVIIRS 120
  121 VTEAKGNQKA FLVCSAYDFY PKAIKLTWMR NDKKVTADVT SIEEMADGDW YYQIHSHLEY 180
  181 FPQPGEKISC VVDHASFHKP MIYYWDPSLP ETERSKIILG AVGLLMGIFT AAAGVIYYKR 240
  241 KQT

Type	Start	End	Confidence
Signal Peptide	1	22	0.97
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	216	0.99
Transmembrane Helix	217	238	0.95
Cytoplasmic	239	243	0.94