YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25136603
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SHSLMVFGTY IAGQTQFPEF SAVVMLDDLQ VLYYDSITQK PVPHSQSNSE YKDTNYTLIF  60
   61 RDMHDLLKYR TFYVKDNWNL TDGLHVYQKH AGCELLDNDE PGLFLSWDAF NGKNTEEFTF 120
  121 DVATRTVQNT LPWMRIKNLS HLEWLQVTFL YKNVYHPICI KTLRRFLGKE KKIVMRKVKP 180
  181 RVRLIKKRLP DCQGLQISCL ATGFYPRHIN LTLFRDTEPV DDDQITGGEI LPNGDGTYQM 240
  241 RKTLIISKEE LHERHQYNCT MKHLDLDNKL DLKFGNEKQA IMKTKHILIL LGFIALYSDE 300
  301 FECDPGFLSL STVIGGLVLC MSVITTALIV WRKRRAA

Type	Start	End	Confidence
Cytoplasmic	1	281	0.61
Transmembrane Helix	282	298	0.56
Non-Cytoplasmic	299	307	0.82
Transmembrane Helix	308	331	0.90
Cytoplasmic	332	337	0.95