YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21104004
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.91
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLRLFYGH LILTLSVLIG AETANVYYRY TWIQCISSSK NLSDMVFIES LYFNKYLFTQ  60
   61 FNSNIGKYVG FSEYGIRNAE FRNNDTNLLL KKKAAVNKVC KNNAINHDKF IRNKAVKPKV 120
  121 KLTLVKPAGG RHPAVLMCSA YEFYPPHIRV YWLRNGEVIT SDVTSTMEMA DGDWYYQIHS 180
  181 ELEYSPKSGE RISCGIEHAS SNKPIITEWD SSRPASERNK IAIGASGVVL GIIIPAICFI 240
  241 YYKKTA

Type	Start	End	Confidence
Signal Peptide	1	23	0.92
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	220	0.97
Transmembrane Helix	221	242	0.94
Cytoplasmic	243	246	0.88