YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26788023
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.92
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLNLSSCP PILALFVLIR AENANEYYAT QWSRCFFTSH DLSDMVLIDN YYFNKHLITQ  60
   61 FNSTLGKFVG FTEFGVRNAE RLNNNSVILQ KEMKSVDLEC RFYVEKAAFR TKAVKPTVVL 120
  121 SSVTQTDGRR PAMFICSAYE FYPQHIKVSW LKDGKAVTSE VTSTMEMADG DWYYQIHSEL 180
  181 EYTPRPGEKI SCMVEHASSS KPMIYDWDPS RAESERIKIA VGASGLVIGF IIAAVELFYY 240
  241 RKKLT

Type	Start	End	Confidence
Signal Peptide	1	21	0.95
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	218	0.98
Transmembrane Helix	219	240	0.92
Cytoplasmic	241	245	0.91