YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27820077
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LIEFSADLDQ SFQSPRNREQ TARMTSRNLT EVFVIMRNNA SKNRNHYDDR RGSDAERLLK  60
   61 HSVREAEEGL ELQDDYGTPP AWLDKFEEAQ YTMSKIKPKL DELGSLHARH LLRPAFDDQR 120
  121 DDECDIEVLS QIVSKLITST HRHIQCVRSS IGVGSKMEQC LTVNAVHCAL LQLQELTVKF 180
  181 RASQNAYLLQ LNSREERSQK YFDDGGGAGA GDVFTNVELG EQSAENFVDS FDNFLQPPAE 240
  241 GKSGNGYLFE DDEQAIDDHF QRPPASRMTQ QQLLLFEEEN TRVAQHREQE VTKIVKSIYD 300
  301 LNDIFKDLGH MVQEQGTVLD RIDYNVEQTQ TRVSEGLRQL HKAEMYQRKN RKMCVILVLA 360
  361 AVTFFMLLLL ILTKL

Type	Start	End	Confidence
Cytoplasmic	1	352	0.88
Transmembrane Helix	353	373	0.94
Non-Cytoplasmic	374	375	0.82