YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27820056
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YKLRIFPTYA HVTSSQIRTG TIATMPEDVM VPAGDYKLVK QIRRNQETRR KKDLPWSKRI  60
   61 FDIDEHKLFG RTALGWMRIT GFYLVLYALI VCIVAFWLGI FMLAIIDPNK PRWLKGPPGL 120
  121 SMVPNQNRSV LAYFTHIMSE VNPIADRIDD FLNKLNDNAI DFFADFNQDT TWGYATEKPT 180
  181 VFIKLNKVIG YVPETYDTPD DLPKEAPASL QDTVGKLGNT PKIWITCEVT NGPKPEMVFY 240
  241 PGPYFEASEN MRGVTRVVAI QMNKMPENAK TFFSCKVWAR NIPIDDDYQG MGIIKFALSM 300
  301 RTDDDGNPDF ERPSTRKAPR EIDLESEELV PEPPSPNRPE SMLGGLELPP PPEDEKDALD 360
  361 AMGNDAKKEE MTEPPSL

Type	Start	End	Confidence
Cytoplasmic	1	80	0.89
Transmembrane Helix	81	105	0.90
Non-Cytoplasmic	106	377	0.90