YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG17370-PE, CG17...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.77
Transmembrane Helix	9	29	0.72
Non-Cytoplasmic	30	45	0.74
Transmembrane Helix	46	66	0.74
Cytoplasmic	67	110	0.96
Transmembrane Helix	111	132	0.90
Non-Cytoplasmic	133	136	0.87
Transmembrane Helix	137	159	0.90
Cytoplasmic	160	175	0.86
Transmembrane Helix	176	198	0.89
Non-Cytoplasmic	199	203	0.66
Transmembrane Helix	204	224	0.89
Cytoplasmic	225	231	0.75
Transmembrane Helix	232	252	0.89
Non-Cytoplasmic	253	303	0.95
Transmembrane Helix	304	324	0.92
Cytoplasmic	325	350	0.90
Transmembrane Helix	351	370	0.94
Non-Cytoplasmic	371	379	0.75
Transmembrane Helix	380	399	0.94
Cytoplasmic	400	422	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHGGAGGGL GAQTVGAGQL GGGAAAAGGG EYRELHWTVS SVMDSSRVST CLISMLLIVY  60
   61 GSFRSLNIEQ EAREREQKKR NESMTNLLTG EPVEKEPNLY FTADKFATLD TMHALCLPLG 120
  121 ASISLLIMFF FFDSMQLLFA VCTAIIATVA LAFLLLPMCQ YIIRPCTDGK RFSFGFCGRF 180
  181 TAAELFSFTL SVSIVCIWVL TGHWLLMDAM GMGLCVAFIA FVRLPSLKVS TLLLTGLLIY 240
  241 DVFWVFLSSY IFSTNVMVKV ATRPADNPVG IVARKLHLGG IVRDTPKLNL PGKLVFPSLH 300
  301 NTGHFSMLGL GDVVMPGLLL CFVLRYDAYK KAQGVTSDPT LSPPRGVGSR LTYFHCSLLG 360
  361 YFLGLLTATV SSEVFKAAQP ALLYLVPFTL LPLLLMAYLK GDLRRMWSEP FIAQQPSKQL 420
  421 EV