YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55925437, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEKKSEING HAGHKCSLPT VSIKSEKKSC KDKCAGFFKR NLLVIMTVSG VLVGVGLGMM  60
   61 VRNMNLTRAQ MTYFAFPGEM LLRMLKMIIL PLVVCSLISG AASLDTRSLG KLGGIAVSYF 120
  121 LVTTLIASSI GVALAFIIKP GVGAGALNTN NLGLEGVSNN KETADSFLDL ARNLFPSNLV 180
  181 AAAFRSVPFG TDTDGMNILG LVLFAMVFGV ALRKLGAEGE ELIRFFNAFN EATMVLVSWI 240
  241 MWYVPFGIMF LVGSKIVEME DVVLLVTSLG KYIFASILGH IIHGCIILPL IYFGFTRTNP 300
  301 YSFLSGLITP FTTAFATCSS SATLPTMMKC VEENNGVDKR ISRFILPIGA TVNMDGAAIF 360
  361 QCVAAVFIAQ LNNVDLNAGQ IFTILVTATA SSVGAAGIPA GGIITIAIIL EAIGLPTHDL 420
  421 SLMLAVDWIV DRTTTVVNVE GDALGAGILH HINEQEMKKQ KHQQEHQEEQ ELLEVKVEVV 480
  481 ANVKAEEETS PLVTHQNQEE NSSRETLNDK DGVESVL

Type	Start	End	Confidence
Cytoplasmic	1	40	0.91
Transmembrane Helix	41	61	0.93
Non-Cytoplasmic	62	81	0.86
Transmembrane Helix	82	104	0.89
Cytoplasmic	105	114	0.81
Transmembrane Helix	115	138	0.91
Non-Cytoplasmic	139	195	0.88
Transmembrane Helix	196	216	0.88
Cytoplasmic	217	231	0.64
Transmembrane Helix	232	253	0.79
Non-Cytoplasmic	254	271	0.73
Transmembrane Helix	272	295	0.87
Cytoplasmic	296	344	0.52
Transmembrane Helix	345	369	0.73
Non-Cytoplasmic	370	380	0.60
Transmembrane Helix	381	413	0.74
Cytoplasmic	414	517	0.72