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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|11602643
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.47
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQSHQAGYA NAADRESGIP AAVLDGIKAV AKEKNATLMF RLVNPHSTSL IAEGVATKGL  60
   61 GVHAKSSDWG LQAGYIPVNP NLSKLFGRAP EVIARADNDV NSSLAHGHTA VDLTLSKERL 120
  121 DYLRQAGLVT GMADGVVASN HAGYEQFEFR VKETSDGRYA VQYRRKGGDD FEAVKVIGNA 180
  181 AGIPLTADID MFAIMPHLSN FRDSARSSVT SGDSVTDYLA RTRRAASEAT GGLDRERIDL 240
  241 LWKIARAGAR SAVGTEARRQ FRYDGDMNIG VITDFELEVR NALNRRAHAV GRQDVVQHGT 300
  301 EQNNPFPEAD EKIFVVSATG ESQMLTRGQL KEYIGQQRGE GYVFYENRAY GVAGKSLFDD 360
  361 GLGAAPGVPG RRSKSSPDVL ETVPASPGLR RPSLGAVERQ DSGYDSLDGV GSRSFSLGEV 420
  421 SDMAAVEAAE LEMTRQVLHA GARQDDAEPG VSGASAHWGQ RALQGAQAVA AAQRLVHAIA 480
  481 LMTQFGRAGS TNTPQEAASL SAAVFGLGEA SSAVAETVSG FFRGSSRWAG GFGVAGGAMA 540
  541 LGGGIGAVGA GMSLTDDAPA GQKAAAGAEI ALQLTGGTVE LASSIALALA AARGVTSGLQ 600
  601 VAGASAGAAA GALAAALSPM EIYGLVQQSH YADQLDKLAQ ESSAYGYEGD ALLAQLYRDK 660
  661 TAAEGAVAGV SAVLSTVGAA VSIAAAASVV GAPVAVVTSL LTGALNGILR GVQQPIIEKL 720
  721 ANDYARKIDE LGGPQAYFEK NLQARHEQLA NSDGLRKMLA DLQAGWNASS VIGVQTTEIS 780
  781 KSALELAAIT GNADNLKSAD VFVDRFIQGE RVAGQPVVLD VAAGGIDIAS RKGERPALTF 840
  841 ITPLAAPGEE QRRRTKTGKS EFTTFVEIVG KQDRWRIRDG AADTTIDLAK VVSQLVDANG 900
  901 VLKHSIKLEV IGGDGDDVVL ANASRIHYDG GAGTNTVSYA ALGRQDSITV SADGERFNVR 960
  961 KQLNNANVYR EGVATQKTAY GKRTENVQYR HVELARVGQL VEVDTLEHVQ HIIGGAGNDS1020
 1021 ITGNAHDNFL AGGAGDDRLD GGAGNDTLVG GEGHNTVVGG AGDDVFLQDL GVWSNQLDGG1080
 1081 AGVDTVKYNV HQPSEERLER MGDTGIHADL QKGTVEKWPA LNLFSVDHVK NIENLHGSSL1140
 1141 NDSIAGDDRD NELWGDDGND TIHGRGGDDI LRGGLGLDTL YGEDGNDIFL QDDETVSDDI1200
 1201 DGGAGLDTVD YSAMIHAGKI VAPHEYGFGI EADLSEGWVR KAARRGMDYY DSVRSVENVI1260
 1261 GTSMKDVLIG DAQANTLMGQ GGDDTVRGGD GDDLLFGGDG NDMLYGDAGN DTLYGGLGDD1320
 1321 TLEGGAGNDW FGQTPAREHD VLRGGAGVDT VDYSQAGAHA GVATGRIGLG ILADLGAGRV1380
 1381 DKLGEAGSSA YDTVSGIENV VGTELADRIT GDAQANVLRG AGGADVLAGG EGDDVLLGGD1440
 1441 GDDQLSGDAG RDRLYGEAGD DWFFQDAANA GNLLDGGDGN DTVDFSGPGR GLDAGAKGVF1500
 1501 LSLGKGFASL MDEPETSNVL RHIENAVGSV RDDVLIGDAG ANVLNGLAGN DVLSGGAGDD1560
 1561 VLLGDEGSDL LSGDAGNDDL FGGQGDDTYL FGAGYGHDTI YESGGGHDTI RINAGADQLW1620
 1621 FARQGNDLEI RILGTDDALT VHDWYRDADH RVEAIHAANQ AIDPAGIEKL VEAMAQYPDP1680
 1681 GAAAAAPPAA RVPDTLMQSL AVNWR

YRC Informatics Platform - Version 3.0
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